New validation service (allow to propagate PSM Validation and/or Protein Set filtering), PTM sites identification available for merged dataset, Studio added parallel coordinates and venn diagram, Web new MS/MS spectra viewer … and more than 50 bug fixes

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Release note

  • New global features (on server):
    • Ptm sites identification for identification and merged RSM
    • Improve search result import performance
    • LC-MS quantitation
      • user can choose to not cross align features between groups.
      • user can choose to retain only reliable cross aligned features.
      • Generated quantitiation datasets list also subset proteins.
    • Validation
      • Add mudpit score for protein sets scoring type
      • Allow user to propagate validation parameters from parent to child datasets
    • Export Pride: fixes connexion to onolies server probel and peptide with ‘X’ in sequence correctly exported
    • Allow SC on merged Search Result if a Validation with propagate on child has been run.
    • Generate sprectrum matches: now generates “z+1″ and “z+2″ ion series depending on the instrument config
  • New features in Studio :
    • Parallel Coordinates first version
    • DataAnalyzer
      • Allow multiples joins
      • venn diagram available
      • Added adjustP column to Compute FDR Function
    • MsFile
      • Raw to mzdb conversion accessible
      • Upload mzdb files on server side (necessary for LCMS Quantitation)
      • Download of mzdb files from server locally
      • Add Working sets containing set of mzdb files to work on
    • MzScope
      • mzScope module enhanced : better isotopic prediction – MSData in profile mode display
      • First implementation of id free QC metrics
      • Display mzdb file properties (converter version, acquisition date, format version, acquisition mode, data encoding)