Annotation of DO Identifiers to DO Terms

Description

This data set gives mappings between DO identifiers and their respective terms.

Details

Each DO identifier is mapped to a DOTerms object that has 4 slots: DOID: DO Identifier; Term: The term for that DO id; Secondary: Secondary terms that have been merged into this term; Synonym: other ontology terms that are considered to be synonymous to the primary term attached to the DO id

Mappings were based on data provided by: Disease Ontology With a date stamp from the source of: 20150323 (sub_version 2806)

References

http://do-wiki.nubic.northwestern.edu/index.php/Main_Page

Examples

    # Convert the object to a list
    FirstTenDOBimap <- DOTERM[1:10] ##grab the 1st ten
    xx <- as.list(FirstTenDOBimap)
     if(length(xx) > 0){
        # Get the TERMS for the 2nd element of xx
        DOID(xx[[2]])
        Term(xx[[2]])
        Synonym(xx[[2]])
        Secondary(xx[[2]])
    }