ProFi Achievements

Publications

533 Entrées « 1 de 6 »

2020

Pirro, M; Rombouts, Y; Stella, A; Neyrolles, O; Burlet-Schiltz, O; van Vliet, S J; de Ru, A H; Mohammed, Y; Wuhrer, M; van Veelen, P A; Hensbergen, P J

Characterization of Macrophage Galactose-type Lectin (MGL) ligands in colorectal cancer cell lines Article de journal

Biochim Biophys Acta Gen Subj, 1864 (4), p. 129513, 2020.

Liens

Ibrahim, M; Ayoub, D; Wasselin, T; Dorsselaer, Van A; Maho, Le Y; Raclot, T; Bertile, F

Alterations in rat adipose tissue transcriptome and proteome in response to prolonged fasting Article de journal

Biological Chemistry, 401 (3), p. 389-405, 2020.

Liens

Bouyssié, D; Hesse, A M; Mouton-Barbosa, E; Rompais, M; Macron, C; Carapito, C; de Peredo, A G; Couté, Y; Dupierris, V; Burel, A; Menetrey, J P; Kalaitzakis, A; Poisat, J; Romdhani, A; Burlet-Schiltz, O; Cianférani, S; Garin, J; Bruley, C

Proline: an efficient and user-friendly software suite for large-scale proteomics Article de journal

Bioinformatics, 2020.

Liens

Bonnet, M; Soulat, J; Bons, J; Leger, S; Koning, De L; Carapito, C; Picard, B

Quantification of biomarkers for beef meat qualities using a combination of Parallel Reaction Monitoring- and antibody-based proteomics Article de journal

Food Chem, 317 , p. 126376., 2020.

Liens

Locard-Paulet, M; Bouyssié, D; Froment, C; Burlet-Schiltz, O; Jensen, L J

Comparing 22 Popular Phosphoproteomics Pipelines for Peptide Identification and Site Localization Article de journal

J. Proteome Res., 19 (3), p. 1338–1345, 2020.

Liens

Imbert, C; Montfort, A; Fraisse, M; Marcheteau, E; Gilhodes, J; Martin, E; Bertrand, F; Marcellin, M; Burlet-Schiltz, O; Peredo, A G; Garcia, V; Carpentier, S; Tartare-Deckert, S; Brousset, P; Rochaix, P; Puisset, F; Filleron, T; Meyer, N; Lamant, L; Levade, T; Ségui, B; Andrieu-Abadie, N; Colacios, C

Resistance of melanoma to immune checkpoint inhibitors is overcome by targeting the sphingosine kinase-1 Article de journal

Nat Commun, 11 (1), p. 437, 2020.

Liens

Froment, C; Hourset, M; S?enz-Oyh?r?guy, N; Mouton-Barbosa, E; Willmann, C; Zanolli, C; Esclassan, R; Donat, R; Th?ves, C; Burlet-Schiltz, O; Mollereau, C

Analysis of 5000 year-old human teeth using optimized large-scale and targeted proteomics approaches for detection of sex-specific peptides Article de journal

J Proteomics, 211 , p. 103548, 2020.

Liens

Clement, E; Lazar, I; Attané, C; Carrié, L; Dauvillier, S; Ducoux-Petit, M; Estève, D; Menneteau, T; Moutahir, M; Gonidec, Le S; Dalle, S; Valet, P; Burlet-Schiltz, O; Muller, C; Nieto, L

Adipocyte extracellular vesicles carry enzymes and fatty acids that stimulate mitochondrial metabolism and remodeling in tumor cells Article de journal

EMBO J., 39 (3), p. e102525, 2020.

Liens

2019

Bouyssié, D; Lesne, J; Locard-Paulet, M; Albigot, R; Burlet-Schiltz, O; Marcoux, J

HDX-Viewer: interactive 3D visualization of hydrogen-deuterium exchange data Article de journal

Bioinformatics, 35 (24), p. 5331–5333, 2019.

Liens

Santin, Y; Fazal, L; Sainte-Marie, Y; Sicard, P; Maggiorani, D; Tortosa, F; Y?cel, Y Y; Teyssedre, L; Rouquette, J; Marcellin, M; Vindis, C; Shih, J C; Lairez, O; Burlet-Schiltz, O; Parini, A; Lezoualc'h, F; Mialet-Perez, J

Mitochondrial 4-ĦNE derived from MAO-A promotes mitoCa2+ overload in chronic postischemic cardiac remodeling Article de journal

Cell Death Differ., 2019.

Liens

Baxter, P N W; Ouahabi, Al A; Karmazin, L; Varnek, A; Strub, J M; Cianferani, S

An Investigation into the Stephens-Castro Synthesis of Dehydrotriaryl[12]annulenes: Factors Influencing the Cyclotrimerization Article de journal

European Journal of Organic Chemistry, 40 , p. 6783-6795, 2019, (2019-02).

Liens

Barre, A; Pichereaux, C; Velazquez, E; Maudouit, A; Simplicien, M; Garnier, L; Bienvenu, F; Bienvenu, J; Burlet-Schiltz, O; Auriol, C; Benoist, H; Rougé, P

Insights into the Allergenic Potential of the Edible Yellow Mealworm (Ŧenebrio molitor) Article de journal

Foods, 8 (10), 2019.

Liens

Voisinne, G; Kersse, K; Chaoui, K; Lu, L; Chaix, J; Zhang, L; Menoita, Goncalves M; Girard, L; Ounoughene, Y; Wang, H; Burlet-Schiltz, O; Luche, H; Fiore, F; Malissen, M; de Peredo, Gonzalez A; Liang, Y; Roncagalli, R; Malissen, B

Quantitative interactomics in primary T cells unveils TCR signal diversification extent and dynamics Article de journal

Nat. Immunol., 20 (11), p. 1530–1541, 2019.

Liens

Ayala-Nunez, NV.; Follain, G; Delalande, F; Hirschler, A; Partiot, E; Hale, GL.; Bollweg, BC.; Roels, J; Chazal, M; Bakoa, F; Carocci, M; Bourdoulous, S; Faklaris, O; Zaki, SR.; Eckly, A; Uring-Lambert, B; Doussau, F; Cianferani, S; Carapito, C; Jacobs, FMJ.; Jouvenet, N; Goetz, JG.; Gaudin, R

Zika virus enhances monocyte adhesion and transmigration favoring viral dissemination to neural cells Article de journal

Nat Commun. 2019 Sep 27;10(1):4430., 2019.

Liens

S, Hessmann Erb Rabuka Huguet Josephs Beck Drake PM Cianférani Hernandez-Alba Houel S S D R J A S O

A Case Study to Identify the Drug Conjugation Site of a Site-Specific Antibody-Drug-Conjugate Using Middle-Down Mass Spectrometry Article de journal

J Am Soc Mass Spectrom., 30 (11), p. 2419-2429., 2019.

Liens

Schneider, F; Dureau, A -F; Hellé, S; Betscha, C; Senger, B; Cremel, G; Boulmedais, F; Strub, J M; Corti, A; Meyer, N; Guillot, M; Schaaf, P; Metz-Boutigue, M H

A Pilot Study on Continuous Infusion of 4% Albumin in Critically Ill Patients: Impact on Nosocomial Infection via a Reduction Mechanism for Oxidized Substrates Article de journal

Critical Care Explorations, 1 (9), 2019, (non).

Liens

Sabou, M; Doderer-Lang, C; Leyer, C; Konjic, A; Kubina, S; Lennon, S; Rohr, O; Viville, S; Cianférani, S; Candolfi, E; Pfaff, AW.; Brunet, J

Toxoplasma gondii ROP16 kinase silences the cyclin B1 gene promoter by hijacking host cell UHRF1-dependent epigenetic pathways Article de journal

Cell Mol Life Sci. 2019 Sep 6., 2019.

Liens

Hartmann, L; Botzanowski, T; Galibert, M; Jullian, M; l Chabrol, E; Zeder-Lutz, G; Kugler, V; Stojko, J; Strub, JM.; Ferry, G; Frankiewicz, L; Puget, K; Wagner, R; Cianférani, S; Boutin, JA.

VHH characterization. Comparison of recombinant with chemically synthesized anti-HER2 VHH Article de journal

Protein Sci., 28 (10), p. 1865-1879, 2019.

Liens

Chazarin, B; Ziemianin, A; Evans, A L; Meugnier, E; Loizon, E; Chery, I; Arnemo, J M; Swenson, J E; Gauquelin-Koch, G; Simon, C; Blanc, S; Lefai, E; Bertile, F

Limited oxidative stress favors resistance to skeletal muscle atrophy in hibernating brown bears (Ursus arctos) Article de journal

Antioxidants, 8 (9), p. 334, 2019, (2011/34).

Liens

Gervason, S; Larkem, D; Mansour, AB.; Botzanowski, T; Müller, CS.; Pecqueur, L; Pavec, Le G; Delaunay-Moisan, A; Brun, O; Agramunt, J; Grandas, A; Fontecave, M; Schünemann, V; Cianférani, S; Sizun, C; Tolédano, MB.; D'Autréaux, B

Physiologically relevant reconstitution of iron-sulfur cluster biosynthesis uncovers persulfide-processing functions of ferredoxin-2 and frataxin Article de journal

Nat Commun., 10 (1), p. 3566, 2019.

Liens

Sanchez, CP.; Cubel, Moliner S; Nyboer, B; Jankowska-Döllken, M; Schaeffer-Reiss, C; Ayoub, D; Planelles, G; Lanzer, M

Phosphomimetic substitution at Ser-33 of the chloroquine resistance transporter PfCRT reconstitutes drug responses in Plasmodium falciparum Article de journal

J Biol Chem., p. pii: jbc.RA119.009464., 2019.

Liens

Quque, M; Benhaim-Delarbre, M; Deneubourg, JL.; Sueur, C; Criscuolo, F; Bertile, F

Division of labour in the black garden ant (Lasius niger) leads to three distinct proteomes Article de journal

J Insect Physiol., 117 , p. 103907, 2019, (2015/29).

Liens

Dalzon, B; Bons, J; Diemer, H; Collin-Faure, V; Marie-Desvergne, C; Dubosson, M; Cianferani, S; Carapito, C; Rabilloud, T

A Proteomic View of Cellular Responses to Anticancer Quinoline-Copper Complexes Article de journal

Proteomes, 7 (2), p. pii: E26, 2019.

Liens

Chazarin, B; Storey, KB.; Ziemianin, A; Chanon, S; Plumel, M; Chery, I; Durand, C; Evans, AL.; Arnemo, JM.; Zedrosser, A; Swenson, JE.; Gauquelin-Koch, G; Simon, C; Blanc, S; Lefai, E; Bertile, F

Metabolic reprogramming involving glycolysis in the hibernating brown bear skeletal muscle Article de journal

Front Zool., 16 , p. 12, 2019.

Liens

Plumel, M; Dumont, S; Maes, P; Sandu, C; Felder-Scmittbuhl, M P; Challet, E; Bertile, F

Circadian Analysis of the Mouse Cerebellum Proteome Article de journal

International Journal of Molecular Sciences, 20 (8), p. 1852, 2019, (2012/26).

Liens

Giroud, S; Chery, I; F., Bertile;; Bertrand-Michel, J; Tascher, G; Gauquelin-Koch, G; Arnemo, J M; Swenson, J E; Singh, N V; Lefai, E; Evans, A L; Simon, C; Blanc, S

Lipidomics Reveals Seasonal Shifts in a Large-Bodied Hibernator, the Brown Bear Article de journal

Front Physiol., 10 , p. 389, 2019, (2011/30).

Liens

Camus, M; Hirschi, S; Prevot, G; Chenard, M P; Mal, H; Stern, M; Reynaud-Gaubert, M; Gilhodes, J; Burlet-Schiltz, O; Brousset, P; Colombat, M

Proteomic evidence of specific IGKV1-8 association with cystic lung light chain deposition disease Article de journal

Blood, 133 (26), p. 2741–2744, 2019.

Liens

Chabert, M; Rousset, X; Colombat, M; Lacasa, M; Kakanakou, H; Bourderioux, M; Brousset, P; Burlet-Schiltz, O; Liepnieks, J J; Kluve-Beckerman, B; Lambert, G; Châtelet, F P; Benson, M D; Kalopissis, A D

A transgenic mouse model reproduces human hereditary systemic amyloidosis Article de journal

Kidney Int., 96 (3), p. 628–641, 2019.

Liens

Bons, J; Macron, C; Aude-Garcia, C; Vaca-Jacome, SA.; Rompais, M; Cianférani, S; Carapito, C; Rabilloud, T

A Combined N-terminomics and Shotgun Proteomics Approach to Investigate the Responses of Human Cells to Rapamycin and Zinc at the Mitochondrial Level Article de journal

Mol Cell Proteomics, 18 (6), p. 1085-1095, 2019.

Liens

Muller, L; Fornecker, L; Cianferani, S; Carapito, C

Tube-Gel: A Fast and Effective Sample Preparation Method for High-Throughput Quantitative Proteomics Article de journal

Methods Mol Biol., 1959 , p. 123-127, 2019.

Liens

Pichereaux, C; Laurent, E A; Gargaros, A; Viudes, S; Durieu, C; Lamaze, T; Grieu, P; Burlet-Schiltz, O

Analysis of durum wheat proteome changes under marine and fungal biostimulant treatments using large-scale quantitative proteomics: A useful dataset of durum wheat proteins Article de journal

J Proteomics, 200 , p. 28–39, 2019.

Liens

Tascher, G; Burban, A; Camus, S; Plumel, M; Chanon, S; Guevel, Le R; Shevchenko, V; Dorsselaer, Van A; Lefai, E; Guguen-Guillouzo, C; Bertile, F

In-Depth Proteome Analysis Highlights HepaRG Cells as a Versatile Cell System Surrogate for Primary Human Hepatocytes Article de journal

Cells, 8 (2), p. 192, 2019, (2012/20).

Liens

Beck, A; D'Atri, V; Ehkirch, A; Fekete, S; Hernandez-Alba, O; Gahoual, R; Leize-Wagner, E; François, Y; Guillarme, D; Cianférani, S

Cutting-edge multi-level analytical and structural characterization of antibody-drug conjugates: present and future Article de journal

Expert Rev Proteomics., 16 (4), p. 337-362., 2019, (review).

Liens

Locard-Paulet, M; Parra, J; Albigot, R; Mouton-Barbosa, E; Bardi, L; Burlet-Schiltz, O; Marcoux, J

VisioProt-MS: interactive 2D maps from intact protein mass spectrometry Article de journal

Bioinformatics, 35 (4), p. 679–681, 2019.

Liens

Strassel, C; Magiera, MM.; Dupuis, A; Batzenschlager, M; Hovasse, A; Pleines, I; Guéguen, P; Eckly, A; Moog, S; Mallo, L; Kimmerlin, Q; Chappaz, S; Strub, JM.; Kathiresan, N; de la Salle, H; Dorsselaer, Van A; Ferec, C; Py, JY.; Gachet, C; Schaeffer-Reiss, C; Kile, BT.; Janke, C; Lanza, F

An essential role for α4A-tubulin in platelet biogenesis Article de journal

Life Sci Alliance, 2 (1), p. pii: e201900309., 2019.

Liens

Hyenne, V; Ghoroghi, S; Collot, M; Bons, J; Follain, G; Harlepp, S; Mary, B; Bauer, J; Mercier, L; Busnelli, I; Lefebvre, O; Fekonja, N; Garcia-Leon, MJ.; Machado, P; Delalande, F; López, AA.; Silva, SG.; Verweij, FJ.; van Niel, G; Djouad, F; Peinado, H; Carapito, C; Klymchenko, AS.; Goetz, JG.

Studying the Fate of Tumor Extracellular Vesicles at High Spatiotemporal Resolution Using the Zebrafish Embryo Article de journal

Dev Cell., 48 (4), p. 554-572.e7, 2019.

Liens

Menneteau, T; Fabre, B; Garrigues, L; Stella, A; Zivkovic, D; Roux-Dalvai, F; Mouton-Barbosa, E; Beau, M; Renoud, M L; Amalric, F; Sensébé, L; Gonzalez-de-Peredo, A; Ader, I; Burlet-Schiltz, O; Bousquet, M P

Mass Spectrometry-based Absolute Quantification of 20S Proteasome Status for Controlled Ex-vivo Expansion of Ħuman Adipose-derived Mesenchymal Stromal/Stem Cells Article de journal

Mol. Cell Proteomics, 18 (4), p. 744–759, 2019.

Liens

Fornecker, LM.; Muller, L; Bertrand, F; Paul, N; Pichot, A; Herbrecht, R; Chenard, MP.; Mauvieux, L; Vallat, L; Bahram, S; Cianférani, S; Carapito, R; Carapito, C

Multi-omics dataset to decipher the complexity of drug resistance in diffuse large B-cell lymphoma Article de journal

Sci Rep., 9 (1), p. 895, 2019.

Liens

Aniort, J; Stella, A; Philipponnet, C; Poyet, A; Polge, C; Claustre, A; Combaret, L; B?chet, D; Attaix, D; Boisgard, S; Filaire, M; Rosset, E; Burlet-Schiltz, O; Heng, A E; Taillandier, D

Muscle wasting in patients with end-stage renal disease or early-stage lung cancer: common mechanisms at work Article de journal

J Cachexia Sarcopenia Muscle, 10 (2), p. 323–337, 2019.

Liens

Groysbeck, N; Stoessel, A; Donzeau, M; da Silva, EC.; Lehmann, M; Strub, JM.; Cianferani, S; Dembélé, K; Zuber, G

Synthesis and biological evaluation of 2.4 nm thiolate-protected gold nanoparticles conjugated to Cetuximab for targeting glioblastoma cancer cells via the EGFR Article de journal

Nanotechnology, 30 (18), p. 184005., 2019.

Liens

Rochel, N; Krucker, C; Coutos-Thévenot, L; Osz, J; Zhang, R; Guyon, E; Zita, W; Vanthong, S; Hernandez-Alba, O; Bourguet, M; Badawy, Al K; Dufour, F; Peluso-Iltis, C; Heckler-Beji, S; Dejaegere, A; Kamoun, A; de Reyniès, A; Neuzillet, Y; Rebouissou, S; Béraud, C; Lang, H; Massfelder, T; Allory, Y; Cianférani, S; Stote, R H; Radvanyi, F; Bernard-Pierrot, I

Recurrent activating mutations of PPARγ associated with luminal bladder tumors Article de journal

Nature Communications, 10 (1), p. 253, 2019.

Liens

Niazi, AK.; Bariat, L; Riondet, C; Carapito, C; Mhamdi, A; Noctor, G; Reichheld, JP.

Cytosolic Isocitrate Dehydrogenase from Arabidopsis thaliana Is Regulated by Glutathionylation Article de journal

Antioxidants (Basel), 8 (1), p. pii: E16., 2019.

Liens

è, Agn; Tillet, Emmanuelle; Ricard, Nicolas; Ouarné, Marie; Mallet, Christine; Belmudes, Lucid; Couté, Yohann; Boillot, Olivier; Scoazec, Jean-Yves; Bailly, Sabine; Feige, Jean-Jacques

Bone Morphogenetic Protein 9 Is a Paracrine Factor Controlling Liver Sinusoidal Endothelial Cell Fenestration and Protecting Against Hepatic Fibrosis Article de journal

Hepatology (Baltimore, Md.), 70 (4), p. 1392–1408, 2019, ISSN: 1527-3350.

Résumé | Liens

Azevedo, Jacinthe; Picart, Claire; Dureau, Laurent; Pontier, Dominique; Jaquinod-Kieffer, Sylvie; Hakimi, Mohamed-Ali; Lagrange, Thierry

UAP56 associates with DRM2 and is localized to chromatin in Arabidopsis Article de journal

FEBS open bio, 9 (5), p. 973–985, 2019, ISSN: 2211-5463.

Résumé | Liens

Vandenbrouck, Yves; Christiany, David; Combes, Florence; Loux, Valentin; Brun, Virginie

Bioinformatics Tools and Workflow to Select Blood Biomarkers for Early Cancer Diagnosis: An Application to Pancreatic Cancer Article de journal

Proteomics, 19 (21-22), p. e1800489, 2019, ISSN: 1615-9861.

Résumé | Liens

Guillot, Laetitia; Delage, Ludovic; Viari, Alain; Vandenbrouck, Yves; Com, Emmanuelle; Ritter, Andrés; Lavigne, Régis; Marie, Dominique; Peterlongo, Pierre; Potin, Philippe; Pineau, Charles

Peptimapper: proteogenomics workflow for the expert annotation of eukaryotic genomes Article de journal

BMC genomics, 20 (1), p. 56, 2019, ISSN: 1471-2164.

Résumé | Liens

Legendre, Matthieu; Alempic, Jean-Marie; è, Nad; Lartigue, Audrey; Jeudy, Sandra; Poirot, Olivier; Ta, Ngan Thi; Nin, Sébastien; Couté, Yohann; Abergel, Chantal; Claverie, Jean-Michel

Pandoravirus Celtis Illustrates the Microevolution Processes at Work in the Giant Pandoraviridae Genomes Article de journal

Frontiers in Microbiology, 10 , p. 430, 2019, ISSN: 1664-302X.

Résumé | Liens

Do, Le Duy; Gupton, Stephanie L; Tanji, Kunikazu; Bastien, Joubert; è, Sabine Brugi; Couté, Yohann; Quadrio, Isabelle; Rogemond, Veronique; Fabien, Nicole; Desestret, Virginie; Honnorat, Jerome

TRIM9 and TRIM67 Are New Targets in Paraneoplastic Cerebellar Degeneration Article de journal

Cerebellum (London, England), 18 (2), p. 245–254, 2019, ISSN: 1473-4230.

Résumé | Liens

Wieczorek, Samuel; Giai Gianetto, Quentin ; Burger, Thomas

Five simple yet essential steps to correctly estimate the rate of false differentially abundant proteins in mass spectrometry analyses Article de journal

Journal of Proteomics, 207 , p. 103441, 2019, ISSN: 18743919.

Résumé | Liens

Wei, Jiajie; Kishton, Rigel J; Angel, Matthew; Conn, Crystal S; Dalla-Venezia, Nicole; Marcel, Virginie; Vincent, Anne; Catez, Frédéric; Ferré, Sabrina; Ayadi, Lilia; Marchand, Virginie; Dersh, Devin; Gibbs, James S; Ivanov, Ivaylo P; Fridlyand, Nathan; Couté, Yohann; Diaz, Jean-Jacques; Qian, Shu-Bing; Staudt, Louis M; Restifo, Nicholas P; Yewdell, Jonathan W

Ribosomal Proteins Regulate MHC Class I Peptide Generation for Immunosurveillance Article de journal

Molecular Cell, 2019, ISSN: 1097-4164.

Résumé | Liens

Kraut, Alexandra; Louwagie, Mathilde; Bruley, Christophe; Masselon, Christophe; Couté, Yohann; Brun, Virginie; Hesse, Anne-Marie

Protein Biomarker Discovery in Non-depleted Serum by Spectral Library-Based Data-Independent Acquisition Mass Spectrometry Article de journal

Methods in Molecular Biology (Clifton, N.J.), 1959 , p. 129–150, 2019, ISSN: 1940-6029.

Résumé | Liens

Steingruber, Mirjam; Keller, Lena; Socher, Eileen; Ferre, Sabrina; Hesse, Anne-Marie; Couté, Yohann; Hahn, Friedrich; Büscher, Nicole; Plachter, Bodo; Sticht, Heinrich; Marschall, Manfred

Cyclins B1, T1, and H differ in their molecular mode of interaction with cytomegalovirus protein kinase pUL97 Article de journal

The Journal of Biological Chemistry, 294 (15), p. 6188–6203, 2019, ISSN: 1083-351X.

Résumé | Liens

Siebert, Claire; Lindgren, Helena; Ferré, Sabrina; Villers, Corinne; Boisset, Sandrine; Perard, Julien; Sjöstedt, Anders; Maurin, Max; Brochier-Armanet, Céline; Couté, Yohann; Renesto, Patricia

Francisella tularensis: FupA mutation contributes to fluoroquinolone resistance by increasing vesicle secretion and biofilm formation Article de journal

Emerging Microbes & Infections, 8 (1), p. 808–822, 2019, ISSN: 2222-1751.

Résumé | Liens

Lupette, Josselin; Jaussaud, Antoine; Seddiki, Khawla; Morabito, Christian; è, Sabine Brugi; Schaller, Hubert; Kuntz, Marcel; Putaux, Jean-Luc; Jouneau, Pierre-Henri; Rébeillé, Fabrice; Falconet, Denis; Couté, Yohann; Jouhet, Juliette; Tardif, Marianne; Salvaing, Juliette; Maréchal, Eric

The architecture of lipid droplets in the diatom Phaeodactylum tricornutum Article de journal

Algal Research, 38 , p. 101415, 2019, ISSN: 2211-9264.

Résumé | Liens

Bouchnak, Imen; è, Sabine Brugi; Moyet, Lucas; Le Gall, Sophie ; Salvi, Daniel; Kuntz, Marcel; Tardif, Marianne; Rolland, Norbert

Unraveling Hidden Components of the Chloroplast Envelope Proteome: Opportunities and Limits of Better MS Sensitivity Article de journal

Molecular & cellular proteomics: MCP, 18 (7), p. 1285–1306, 2019, ISSN: 1535-9484.

Résumé | Liens

Moulin, M; Mossou, E; Signor, L; Kieffer-Jaquinod, S; Kwaambwa, H M; Nermark, F; Gutfreund, P; Mitchell, E P; Haertlein, M; Forsyth, V T; Rennie, A R

Towards a molecular understanding of the water purification properties of Moringa seed proteins Article de journal

Journal of Colloid and Interface Science, 554 , p. 296–304, 2019, ISSN: 1095-7103.

Résumé | Liens

Hajj Chehade, Mahmoud ; Pelosi, Ludovic; Fyfe, Cameron David; Loiseau, Laurent; è, Béreng; è, Sabine Brugi; Kazemzadeh, Katayoun; Vo, Chau-Duy-Tam; Ciccone, Lidia; Aussel, Laurent; Couté, Yohann; Fontecave, Marc; Barras, Frédéric; Lombard, Murielle; Pierrel, Fabien

A Soluble Metabolon Synthesizes the Isoprenoid Lipid Ubiquinone Article de journal

Cell Chemical Biology, 26 (4), p. 482––492.e7, 2019, ISSN: 2451-9448.

Résumé | Liens

Sentausa, Erwin; Basso, Pauline; Berry, Alice; Adrait, Annie; Bellement, Gwendoline; Couté, Yohann; Lory, Stephen; Elsen, Sylvie; Attrée, Ina

Insertion sequences drive the emergence of a highly adapted human pathogen Article de journal

Microbial Genomics, 2019, ISSN: 2057-5858.

Résumé | Liens

Braun, Laurence; Brenier-Pinchart, Marie-Pierre; Hammoudi, Pierre-Mehdi; Cannella, Dominique; Kieffer-Jaquinod, Sylvie; Vollaire, Julien; Josserand, Véronique; Touquet, Bastien; Couté, Yohann; Tardieux, Isabelle; Bougdour, Alexandre; Hakimi, Mohamed-Ali

The Toxoplasma effector TEEGR promotes parasite persistence by modulating NF-$kappa$B signalling via EZH2 Article de journal

Nature Microbiology, 4 (7), p. 1208–1220, 2019, ISSN: 2058-5276.

Résumé | Liens

Darrieutort-Laffite, Christelle; Arnolfo, Paul; Garraud, Thomas; Adrait, Annie; Couté, Yohann; Louarn, Guy; Trichet, Valérie; Layrolle, Pierre; Le Goff, Benoit ; Blanchard, Frédéric

Rotator Cuff Tenocytes Differentiate into Hypertrophic Chondrocyte-Like Cells to Produce Calcium Deposits in an Alkaline Phosphatase-Dependent Manner Article de journal

Journal of Clinical Medicine, 8 (10), 2019, ISSN: 2077-0383.

Résumé | Liens

Bhalla, Pratibha; Vernekar, Dipti Vinayak; Gilquin, Benoit; Couté, Yohann; Bhargava, Purnima

Interactome of the yeast RNA polymerase III transcription machinery constitutes several chromatin modifiers and regulators of the genes transcribed by RNA polymerase II Article de journal

Gene, 702 , p. 205–214, 2019, ISSN: 1879-0038.

Résumé | Liens

Jeudy, Sandra; Bertaux, Lionel; Alempic, Jean-Marie; Lartigue, Audrey; Legendre, Matthieu; Belmudes, Lucid; Santini, Sébastien; è, Nad; Beucher, Laure; Biondi, Emanuele G; Juul, Sissel; Turner, Daniel J; Couté, Yohann; Claverie, Jean-Michel; Abergel, Chantal

Exploration of the propagation of transpovirons within Mimiviridae reveals a unique example of commensalism in the viral world Article de journal

The ISME journal, 2019, ISSN: 1751-7370.

Résumé | Liens

Dell'Aglio, Elisa; Giustini, Cecile; Kraut, Alexandra; Couté, Yohann; Costa, Alex; Decros, Guillaume; Gibon, Yves; Mazars, Christian; Matringe, Michel; Finazzi, Giovanni; Curien, Gilles

Identification of the Arabidopsis calmodulin-dependent NAD+ kinase that sustains the elicitor-induced oxidative burst Article de journal

Plant Physiology, 2019, ISSN: 1532-2548.

Résumé | Liens

Chapelle, Jennifer; Sorokina, Oksana; McLean, Colin; Salemme, Vincenzo; Alfieri, Annalisa; Angelini, Costanza; Morellato, Alessandro; Adrait, Annie; Menna, Elisabetta; Matteoli, Michela; Couté, Yohann; Ala, Ugo; Turco, Emilia; Defilippi, Paola; Armstrong, Douglas J

Dissecting the Shared and Context-Dependent Pathways Mediated by the p140Cap Adaptor Protein in Cancer and in Neurons Article de journal

Frontiers in Cell and Developmental Biology, 7 , p. 222, 2019, ISSN: 2296-634X.

Liens

Sonego, Maura; Pellarin, Ilenia; Costa, Alice; Vinciguerra, Gian Luca Rampioni; Coan, Michela; Kraut, Alexandra; D'Andrea, Sara; Dall'Acqua, Alessandra; Castillo-Tong, Dan Cacsire; Califano, Daniela; Losito, Simona; Spizzo, Riccardo; Couté, Yohann; Vecchione, Andrea; Belletti, Barbara; Schiappacassi, Monica; Baldassarre, Gustavo

USP1 links platinum resistance to cancer cell dissemination by regulating Snail stability Article de journal

Science Advances, 5 (5), p. eaav3235, 2019, ISSN: 2375-2548.

Résumé | Liens

Louwagie, Mathilde; Kieffer-Jaquinod, Sylvie; Brun, Virginie

Ultrasensitive Quantification of Recombinant Proteins Using AAA-MS Article de journal

Methods in Molecular Biology (Clifton, N.J.), 2030 , p. 1–10, 2019, ISSN: 1940-6029.

Résumé | Liens

Chiumento, Steve; Roblin, Clarisse; Kieffer-Jaquinod, Sylvie; Tachon, Sybille; è, Chloé Lepr; Basset, Christian; Aditiyarini, Dwi; Olleik, Hamza; Nicoletti, Cendrine; Bornet, Olivier; Iranzo, Olga; Maresca, Marc; Hardré, Renaud; Fons, Michel; Giardina, Thierry; Devillard, Estelle; ç, Fran; Couté, Yohann; Atta, Mohamed; Perrier, Josette; Lafond, Mickael; Duarte, Victor

Ruminococcin C, a promising antibiotic produced by a human gut symbiont Article de journal

Science Advances, 5 (9), p. eaaw9969, 2019, ISSN: 2375-2548.

Résumé | Liens

Nguyen, Lien; Brun, Virginie; Combes, Florence; Loux, Valentin; Vandenbrouck, Yves

Designing an In Silico Strategy to Select Tissue-Leakage Biomarkers Using the Galaxy Framework Article de journal

Methods in Molecular Biology (Clifton, N.J.), 1959 , p. 275–289, 2019, ISSN: 1940-6029.

Résumé | Liens

Beurton, Flore; Stempor, Przemyslaw; Caron, Matthieu; Appert, Alex; Dong, Yan; Chen, Ron A -J; Cluet, David; Couté, Yohann; Herbette, Marion; Huang, Ni; è, Hél; Spichty, Martin; Bedet, Cécile; Ahringer, Julie; Palladino, Francesca

Physical and functional interaction between SET1/COMPASS complex component CFP-1 and a Sin3S HDAC complex in C. elegans Article de journal

Nucleic Acids Research, 2019, ISSN: 1362-4962.

Résumé | Liens

è, Hél; Guibert, Romain; Permiakova, Olga; Burger, Thomas

Distinguishing between Spectral Clustering and Cluster Analysis of Mass Spectra Article de journal

Journal of Proteome Research, 18 (1), p. 571–573, 2019, ISSN: 1535-3907.

Résumé | Liens

Wieczorek, Samuel; Combes, Florence; è, Hél; Burger, Thomas

Protein-Level Statistical Analysis of Quantitative Label-Free Proteomics Data with ProStaR Article de journal

Methods in Molecular Biology (Clifton, N.J.), 1959 , p. 225–246, 2019, ISSN: 1940-6029.

Résumé | Liens

Pinaud, Silvain; ï, Ana; ç, Jean-Fran; Belmudes, Lucid; Saint-Beat, Cécile; Arancibia, Nathalie; Galinier, Richard; Du Pasquier, Louis ; Duval, David; Gourbal, Benjamin

Molecular characterisation of immunological memory following homologous or heterologous challenges in the schistosomiasis vector snail, Biomphalaria glabrata Article de journal

Developmental and Comparative Immunology, 92 , p. 238–252, 2019, ISSN: 1879-0089.

Résumé | Liens

Deutsch, Eric W; Lane, Lydie; Overall, Christopher M; Bandeira, Nuno; Baker, Mark S; Pineau, Charles; Moritz, Robert L; Corrales, Fernando; Orchard, Sandra; Van Eyk, Jennifer E; Paik, Young-Ki; Weintraub, Susan T; Vandenbrouck, Yves; Omenn, Gilbert S

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0 Article de journal

Journal of Proteome Research, 2019, ISSN: 1535-3907.

Résumé | Liens

2018

Boeuf, A; Schnell, G; Bernard, Q; Kern, A; Westermann, B; Ehret-Sabatier, L; Grillon, A; Schramm, F; Jaulhac, B; Boulanger, N

Dissociating effect of salivary gland extract from Ixodes ricinus on human fibroblasts: Potential impact on Borrelia transmission Article de journal

Ticks Tick Borne Dis., 10 (2), p. 433–441, 2018, (2012/29).

Liens

Tascher, G; Gerbaix, M; Maes, P; Chazarin, B; Ghislin, S; Antropova, E; Vassilieva, G; Ouzren-Zarhloul, N; Gauquelin-Koch, G; Vico, L; Frippiat, JP.; Bertile, F

Analysis of femurs from mice embarked on board BION-M1 biosatellite reveals a decrease in immune cell development, including B cells, after 1 wk of recovery on Earth Article de journal

FASEB J., 33 (3), 2018.

Liens

Jonckheere, Julie; Deloulme, Jean-Christophe; Dall'Igna, Gaëlle; Chauliac, Nicolas; Pelluet, Albane; Nguon, Anne-Sophie; Lentini, Celia; Brocard, Jacques; Denarier, Eric; Brugière, Sabine; Couté, Yohann; Heinrich, Christophe; Porcher, Christophe; Holtzmann, Jérôme; Andrieux, Annie; Suaud-Chagny, Marie-Françoise; Gory-Fauré, Sylvie

Short- and long-term efficacy of electroconvulsive stimulation in animal models of depression: The essential role of neuronal survival Article de journal

Brain Stimulation, 11 (6), p. 1336–1347, 2018, ISSN: 1876-4754.

Résumé | Liens

Albaret, Marie Alexandra; Vermot-Desroches, Claudine; Paré, Arnaud; Roca-Martinez, Jean-Xavier; Malet, Lucie; Esseily, Jad; Gerossier, Laetitia; Brière, Johan; Pion, Nathalie; Marcel, Virginie; Catez, Frédéric; Souza, Geneviève De; Vuillermoz, Boris; Doerflinger, Franck; Lavocat, Emilie; Subiger, Olivier; Rousset, Carine; Bresson, Corinne; Mandon, Elodie; Jawhari, Anass; Falson, Pierre; Jasmin, Mélissa; Couté, Yohann; Mertani, Hichem-Claude; Saintigny, Pierre; Diaz, Jean-Jacques

Externalized Keratin 8: A Target at the Interface of Microenvironment and Intracellular Signaling in Colorectal Cancer Cells Article de journal

Cancers, 10 (11), 2018, ISSN: 2072-6694.

Résumé | Liens

Hahn, Friedrich; Hutterer, Corina; Henry, Christophe; Hamilton, Stuart T; Strojan, Hanife; Kraut, Alexandra; Schulte, Ulrike; Schütz, Martin; Kohrt, Stephan; Wangen, Christina; Pfizer, José; Couté, Yohann; Rawlinson, William D; Strobl, Stefan; Marschall, Manfred

Novel cytomegalovirus-inhibitory compounds of the class pyrrolopyridines show a complex pattern of target binding that suggests an unusual mechanism of antiviral activity Article de journal

Antiviral Research, 159 , p. 84–94, 2018, ISSN: 1872-9096.

Résumé | Liens

Borges, Hélène; Guibert, Romain; Permiakova, Olga; Burger, Thomas

Distinguishing between Spectral Clustering and Cluster Analysis of Mass Spectra Article de journal

Journal of Proteome Research, 2018, ISSN: 1535-3907.

Résumé | Liens

Dominguez-Medina, Sergio; Fostner, Shawn; Defoort, Martial; Sansa, Marc; Stark, Ann-Kathrin; Halim, Mohammad Abdul; Vernhes, Emeline; Gely, Marc; Jourdan, Guillaume; Alava, Thomas; Boulanger, Pascale; Masselon, Christophe; Hentz, Sébastien

Neutral mass spectrometry of virus capsids above 100 megadaltons with nanomechanical resonators Article de journal

Science (New York, N.Y.), 362 (6417), p. 918–922, 2018, ISSN: 1095-9203.

Résumé | Liens

Do, Le Duy; Gupton, Stéphanie L; Tanji, Kunikazu; Bastien, Joubert; Brugière, Sabine; Couté, Yohann; Quadrio, Isabelle; Rogemond, Véronique; Fabien, Nicole; Desestret, Virginie; Honnorat, Jérôme

TRIM9 and TRIM67 Are New Targets in Paraneoplastic Cerebellar Degeneration Article de journal

Cerebellum (London, England), 2018, ISSN: 1473-4230.

Résumé | Liens

Völz, Ronny; Kim, Soon-Kap; Mi, Jianing; Mariappan, Kiruthiga G; Guo, Xiujie; Bigeard, Jean; Alejandro, Santiago; Pflieger, Delphine; Rayapuram, Naganand; Al-Babili, Salim; Hirt, Heribert

The Trihelix transcription factor GT2-like 1 (GTL1) promotes salicylic acid metabolism, and regulates bacterial-triggered immunity Article de journal

PLoS genetics, 14 (10), p. e1007708, 2018, ISSN: 1553-7404.

Résumé | Liens

Gervais, Virginie; Mari, Isabelle Muller Pierre-Olivier; Mourcet, Amandine; Movellan, Kumar Tekwani; Ramos, Pascal; Marcoux, Julien; Guillet, Valérie; Javaid, Sumaira; Burlet-Schiltz, Odile; Czaplicki, Georges; Milon, Alain; Giglia-Mari, Giuseppina

Small molecule-based targeting of TTD-A dimerization to control TFIIH transcriptional activity represents a potential strategy for anticancer therapy Article de journal

J Biol Chem., 293 (39), p. 14974-14988, 2018.

Liens

Shiota, Hitoshi; Barral, Sophie; Buchou, Thierry; Tan, Minjia; Couté, Yohann; Charbonnier, Guillaume; Reynoird, Nicolas; Boussouar, Fayçal; Gérard, Matthieu; Zhu, Mingrui; Bargier, Lisa; Puthier, Denis; Chuffart, Florent; Bourova-Flin, Ekaterina; Picaud, Sarah; Filippakopoulos, Panagis; Goudarzi, Afsaneh; Ibrahim, Ziad; Panne, Daniel; Rousseaux, Sophie; Zhao, Yingming; Khochbin, Saadi

Nut Directs p300-Dependent, Genome-Wide Ħ4 Hyperacetylation in Male Germ Cells Article de journal

Cell Reports, 24 (13), p. 3477–3487.e6, 2018, ISSN: 2211-1247.

Résumé | Liens

Nguyen, Minh Vu Chuong; Adrait, Annie; Baillet, Athan; Trocmé, Candice; Gottenberg, Jacques-Eric; Gaudin, Philippe

Identification of cartilage oligomeric matrix protein as biomarker predicting abatacept response in rheumatoid arthritis patients with insufficient response to a first anti-TNFα treatment Article de journal

Joint, Bone, Spine: Revue Du Rhumatisme, 2018, ISSN: 1778-7254.

Liens

Mato, José M; Elortza, Félix; Lu, Shelly C; Brun, Virginie; Paradela, Alberto; Corrales, Fernando J

Liver cancer-associated changes to the proteome: what deserves clinical focus? Article de journal

Expert Review of Proteomics, 15 (9), p. 749–756, 2018, ISSN: 1744-8387.

Résumé | Liens

Locard-Paulet, Marie; Parra, Julien; Albigot, Renaud; Mouton-Barbosa, Emmanuelle; Bardi, Laurent; Burlet-Schiltz, Odile; Marcoux, Julien

VisioProt-MS: interactive 2D maps from intact protein mass spectrometry Article de journal

Bioinformatics, 2018.

Liens

Vinel, Claire; Lukjanenko, Laura; Batut, Aurélie; Deleruyelle, Simon; Pradère, Jean-Philippe; Gonidec, Sophie Le; Dortignac, Alizée; Geoffre, Nancy; Pereira, Ophélie; Karaz, Sonia; Lee, Umji; Camus, Mylène; Chaoui, Karima; Mouisel, Etienne; Bigot, Anne; Mouly, Vincent; Vigneau, Mathieu; Pagano, Allan F; Chopard, Angèle; Pillard, Fabien; Guyonnet, Sophie; Cesari, Matteo; Burlet-Schiltz, Odile; Pahor, Marco; Feige, Jérôme N; Vellas, Bruno; Valet, Philippe; Dray, Cédric

The exerkine apelin reverses age-associated sarcopenia Article de journal

Nat Med., 24 (9), p. 1360-71, 2018.

Liens

Jonik-Nowak, Beata; Menneteau, Thoma; Fesquet, Didier; Baldin, Véronique; Bonne-Andrea, Catherine; Méchali, Francisca; Fabre, Bertrand; Boisguerin, Prisca; de Rossi, Sylvain; Henriquet, Corinne; Pugnière, Martine; Ducoux-Petit, Manuelle; Burlet-Schiltz, Odile; Lamond, Angus I; Fort, Philippe; Boulon, Séverine; Bousquet, Mari-Pierre; Coux, Olivier

PIP30/FAM192A is a novel regulator of the nuclear proteasome activator PA28γ Article de journal

Proc Natl Acad Sci U S A., 115 (28), p. E6477-E6486, 2018.

Liens

Gaud, Guillaume; Roncagalli, Romain; Chaoui, Karima; Bernard, Isabelle; andCéline Colacios, Julien Familiades; Kassem, Sahar; Monsarrat, Bernard; Burlet-Schiltz, Odile; de Peredo, Anne Gonzalez; Malissen, Bernard; Saoudi, Abdelhadi

The costimulatory molecule CD226 signals through VAV1 to amplify TCR signals and promote IL-17 production by CD4+ T cells Article de journal

11 (538), p. eaar3083, 2018.

Liens

Behrens, Christina; Biela, Inna; andThomas Botzanowski, Stéphanie Petiot-Bécard; Cianférani, Sarah; Sager, Christoph P; Klebe, Gerhard; Heine, Andreas; Reuter, Klaus

Homodimer Architecture of QTRT2, the Noncatalytic Subunit of the Eukaryotic tRNA-Guanine Transglycosylase Article de journal

Biochemistry, 57 (26), p. 3953–3965, 2018.

Liens

Fröhlich, Tony; Hahn, Friedrich; Belmudes, Lucid; Leidenberger, Maria; Friedrich, Oliver; Kappes, Barbara; Couté, Yohann; Marschall, Manfred; Tsogoeva, Svetlana B

Synthesis of Artemisinin-Derived Dimers, Trimers and Dendrimers: Investigation of Their Antimalarial and Antiviral Activities Including Putative Mechanisms of Action Article de journal

Chemistry (Weinheim an Der Bergstrasse, Germany), 24 (32), p. 8103–8113, 2018, ISSN: 1521-3765.

Résumé | Liens

Jacob, Laurent; Combes, Florence; Burger, Thomas

PEPA test: fast and powerful differential analysis from relative quantitative proteomics data using shared peptides Article de journal

Biostatistics (Oxford, England), 2018, ISSN: 1468-4357.

Résumé | Liens

Denadai-Souza, Alexandre; Bonnart, Chrystelle; Tapias, Núria Solà; Marcellin, Marlène; andLaurent Alric, Brendan Gilmore; Bonnet, Delphine; Burlet-Schiltz, Odile; Hollenberg, Morley D; Vergnolle, Nathalie; Deraison, Céline

Functional Proteomic Profiling of Secreted Serine Proteases in Health and Inflammatory Bowel Disease Article de journal

Sci Rep, 8 (1), p. 7834, 2018.

Liens

Lefebvre, Cyril; Boulon, Richard; Ducoux, Manuelle; Gavalda, Sabine; Laval, Françoise; Jamet, Stevie; Eynard, Nathalie; Lemassu, Anne; Cam, Kaymeuang; Bousquet, Marie-Pierre; Bardou, Fabienne; Burlet-Schiltz, Odile; Daffé, Mamadou; Quémard, Annaïck

HadD, a novel fatty acid synthase type II protein, is essential for alpha- and epoxy-mycolic acid biosynthesis and mycobacterial fitness Article de journal

Sci Rep, 8 (1), p. 6034, 2018.

Liens

Cayrol, Corinne; Duval, Anaïs; Schmitt, Pauline; Roga, Stéphane; Stella, Mylène Camusand Alexandre; Burlet-Schiltz, Odile; Gonzalez de Peredo, Anne ; Girard, Jean-Philippe

Environmental allergens induce allergic inflammation through proteolytic maturation of IL-33 Article de journal

Nat Immunol, 19 (4), p. 375-385, 2018.

Liens

Garcia, Lény; Girod, Marion; Rompais, Magali; Dugourd, Philippe; Carapito, Christine; Lemoine, Jérôme

Data-Independent Acquisition Coupled to Visible Laser-Induced Dissociation at 473 nm (DIA-LID) for Peptide-Centric Specific Analysis of Cysteine-Containing Peptide Subset Article de journal

Anal Chem., 90 (6), p. 3928-3935, 2018.

Liens

Dovgan, I; Erb, S; Hessmann, S; Ursuegui, S; Michel, C; Muller, C; Chaubet, G; Cianférani, S; Wagner, A

Arginine-selective bioconjugation with 4-azidophenyl glyoxal: application to the single and dual functionalisation of native antibodies Article de journal

Org Biomol Chem., 16 (8), p. 1305-1311, 2018.

Liens

Issa, N; Guillaumot, N; Lauret, E; Matt, N; Schaeffer-Reiss, C; Van Dorsselaer, A; Reichhart, J M; Veillard, F

The Circulating Protease Persephone Is an Immune Sensor for Microbial Proteolytic Activities Upstream of the Drosophila Toll Pathway Article de journal

Mol Cell, 69 (4), p. 539-550 e6, 2018.

Liens

Ehkirch, A; D'Atri, V; Rouvière, F; Hernandez-Alba, O; Goyon, A; Colas, O; Sarrut, M; Beck, A; Guillarme, D; Heinisch, S; Cianférani, S

An online four-dimensional HICxSEC-IMxMS methodology for proof-of-concept characterization of antibody drug conjugates Article de journal

Anal Chem., 90 (3), p. 1578-1586, 2018.

Liens

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