New datastore architecture, separation of Instrument and Fractionnation rules, add new export formats, enhancement of PTM Sites managment and label-free quantitation, …
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Warning: If you are doing an upgrade from previous version, be aware that an important Proline database upgrade is needed. It is highly recommended to make a copy of your databases before the upgrade process (see ProlineSuite Installation Guide).
Release Note
- New feature in Proline Server:
- Change managment on Instrument and Fractionnation Rules : now separated
- Fragmentation rules can be specified when running “Generate Spectrum Matches”
- Fragmentation rules set should be specified at import
- Fragmentation rules set can be configured
- Export
- Spectra librairies could be exported into spectronaut or peakview format.
- mzIdentML export format is now supported
- LC-MS quantitation
- Change the parameter managment
- Some enhancement
- Be more tolerant to LC-MS alignment outliers
- log warn if landmarks cannot be smoothed
- Feature mapping method “PEPTIDE_IDENTITY” now takes into account clusterized features
- Label Free quantitation
- allow quantifier based on quantitative data read from third party software : MaxQuant results
- Bug Fixes
- Quantitation : error getting run for quantitation datasets. That was causing wrong assignments in cross assignment within group quantitation algorithm
- Retrieve Sequence error : When cloning Identification Summary, clone also MSI Search (needed in case of quanti on leaf)
- Import Mascot with invalid ptm classifier
- Properties error for Search Result created with separated Decoy mode.
- Change managment on Instrument and Fractionnation Rules : now separated
- New feature in Proline Proline Admin
- User managment modified. Allowed operation: create, activate, disable, change password.
- Project managment modified. Allowed operation: create, activate, disable, archive, restore.
- Database managment: initialize, check for update, update ….
- New feature in Proline Studio
- Graphical
- Changed PTM Site view
- Add Information in some display (protein description in quantitation view, …)
- Copy/Paste of html cell supported for “search” or “filter” in display
- Show the Merge Mode used when creating merged dataset: union or aggregation
- PTM display on peptide sequences was missing in some views
- drag’n’drop from All imported panel takes filters into account fixes
- Bug fix on filters mapping for join
- Fixes som bugs in Venn diagram graphics
- Algorithm
- Import duration bug (wrong value was displayed)
- Add validation filter on #C13 (isotope offset)
- Fix bug in validation with propagate: dataset tree wasn’t refreshed
- Allow Generate Spectrum Matches even if already defined
- Admin
- Fragmentation rules set can be configured in Admin view
- New view in admin dialog : list of projects/Databases/Databases Size with possibility to filter and export
- None admin user can see admin info (not modify !)
- MzScope
- a spectrum can now be made ‘persistent’ in the display to be visually compared with current spectrum
- bug in mzdb QC metrics calculation corrected
- Display options enhanced
- Set min/max RT for extracted chromatograms to run duration
- Bug fix for batch extraction
- import any CSV file for batch extraction
- enhanced zoom synchronization
- LC-MS Quantitation
- Map aligment display problem fixed
- show reference dataset in experimental design
- Graphical
- New feature in Proline Zero
- Enhanced launcher, now compatible with Windows and Linux
