@article{RN1226,

title = {Differential proteomics reveals age-dependent liver oxidative costs of innate immune activation in mice.},

author = {M Plumel and M Benhaim-Delarbre and M Rompais and D Thiersé and G Sorci and A Dorsselaer and F Criscuolo and F Bertile},

year  = {2016},

date = {2016-01-01},

journal = {J Proteomics.},

number = {135},

pages = {181-90.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN1893,

title = {Functional and Structural Insights of the Zinc-Finger HIT protein family members Involved in Box C/D snoRNP Biogenesis},

author = {B. Bragantini and D. Tiotiu and B. Rothe and J. M. Saliou and H. Marty and S. Cianferani and B. Charpentier and M. Quinternet and X. Manival},

url = {https://www.ncbi.nlm.nih.gov/pubmed/27139642},

doi = {10.1016/j.jmb.2016.04.028},

issn = {1089-8638 (Electronic) 

0022-2836 (Linking)},

year  = {2016},

date = {2016-01-01},

journal = {J Mol Biol},

volume = {428},

number = {11},

pages = {2488-2506},

abstract = {Zf-HIT family members share the zf-HIT domain (ZHD), which is characterized by a fold in "treble-clef" through interleaved CCCC and CCHC ZnF motifs that both bind a zinc atom. Six proteins containing ZHD are present in human and three in yeast proteome, all belonging to multimodular RNA/protein complexes involved in gene regulation, chromatin remodeling, and snoRNP assembly. An interesting characteristic of the cellular complexes that ensure these functions is the presence of the RuvBL1/2/Rvb1/2 ATPases closely linked with zf-HIT proteins. Human ZNHIT6/BCD1 and its counterpart in yeast Bcd1p were previously characterized as assembly factors of the box C/D snoRNPs. Our data reveal that the ZHD of Bcd1p is necessary but not sufficient for yeast growth and that the motif has no direct RNA-binding capacity but helps Bcd1p maintain the box C/D snoRNAs level in steady state. However, we demonstrated that Bcd1p interacts nonspecifically with RNAs depending on their length. Interestingly, the ZHD of Bcd1p is functionally interchangeable with that of Hit1p, another box C/D snoRNP assembly factor belonging to the zf-HIT family. This prompted us to use NMR to solve the 3D structures of ZHD from yeast Bcd1p and Hit1p to highlight the structural similarity in the zf-HIT family. We identified structural features associated with the requirement of Hit1p and Bcd1p ZHD for cell growth and box C/D snoRNA stability under heat stress. Altogether, our data suggest an important role of ZHD could be to maintain functional folding to the rest of the protein, especially under heat stress conditions.},

note = {Bragantini, Benoit 

Tiotiu, Decebal 

Rothe, Benjamin 

Saliou, Jean-Michel 

Marty, Helene 

Cianferani, Sarah 

Charpentier, Bruno 

Quinternet, Marc 

Manival, Xavier 

eng 

Research Support, Non-U.S. Gov't 

Netherlands 

2016/05/04 06:00 

J Mol Biol. 2016 Jun 5;428(11):2488-2506. doi: 10.1016/j.jmb.2016.04.028. Epub 2016 Apr 30.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Reginald2015,

title = {Revisiting the Timing of Action of the PAG Adaptor Using Quantitative Proteomics Analysis of Primary T Cells},

author = {Kavita Reginald and Karima Chaoui and Romain Roncagalli and Mathilde Beau and Marisa Goncalves Menoita and Bernard Monsarrat and Odile Burlet-Schiltz and M Malissen and Anne Gonzalez Peredo and Bernard Malissen},

doi = {10.4049/jimmunol.1501300},

year  = {2015},

date = {2015-12-01},

journal = {The Journal of Immunology},

volume = {195},

number = {11},

pages = {5472--5481},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{burger_geometric_2015,

title = {Geometric views on conflicting mass functions: from distances to angles},

author = {Thomas Burger},

year  = {2015},

date = {2015-12-01},

journal = {International Journal of Approximate Reasoning},

volume = {70},

pages = {36-50},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Spinner2015,

title = {Substrates of the ASB2$alpha$ E3 ubiquitin ligase in dendritic cells},

author = {Camille Spinner and Sandrine Uttenweiler-Joseph and Arnaud Metais and Alexandre Stella and Odile Burlet-Schiltz and Christel Moog-Lutz and Isabelle Lamsoul and Pierre G Lutz},

doi = {10.1038/srep16269},

year  = {2015},

date = {2015-11-01},

journal = {Scientific Reports},

volume = {5},

number = {1},

pages = {16269},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Ainaoui2015,

title = {Promoter-dependent translation controlled by p54nrband hnRNPM during myoblast differentiation},

author = {Nadera Ainaoui and Fransky Hantelys and Edith Renaud-Gabardos and Morgane Bunel and Frédéric Lopez and Françoise Pujol and Remi Planes and Elmostafa Bahraoui and Carole Pichereaux and Odile Burlet-Schiltz and Angelo Parini and Barbara Garmy-Susini and Anne Catherine Prats},

editor = {Yoon Ki Kim},

doi = {10.1371/journal.pone.0136466},

year  = {2015},

date = {2015-09-01},

journal = {PLoS ONE},

volume = {10},

number = {9},

pages = {e0136466},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Carapito2015,

title = {Computational and mass-spectrometry-based workflow for the discovery and validation of missing human proteins: Application to chromosomes 2 and 14},

author = {Christine Carapito and Lydie Lane and Mohamed Benama and Alisson Opsomer and Emmanuelle Mouton-Barbosa and Luc Garrigues and Anne Gonzalez De Peredo and Alexandre Burel and Christophe Bruley and Alain Gateau and David Bouyssié and Michel Jaquinod and Sarah Cianférani and Odile Burlet-Schiltz and Alain Van Dorsselaer and Jérôme Garin and Yves Vandenbrouck},

doi = {10.1021/pr5010345},

year  = {2015},

date = {2015-09-01},

journal = {Journal of Proteome Research},

volume = {14},

number = {9},

pages = {3621-3634},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{mazzoleni_dual_2015,

title = {Dual Targeting of the Protein Methyltransferase PrmA Contributes to Both Chloroplastic and Mitochondrial Ribosomal Protein L11 Methylation in Arabidopsis},

author = {Meryl Mazzoleni and Sylvie Figuet and Jacqueline Martin-Laffon and Morgane Mininno and Annabelle Gilgen and Mélanie Leroux and Sabine Brugière and Marianne Tardif and Claude Alban and Stéphane Ravanel},

doi = {10.1093/pcp/pcv098},

year  = {2015},

date = {2015-09-01},

journal = {Plant & Cell Physiology},

volume = {56},

number = {9},

pages = {1697--1710},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Mouledous2015,

title = {Phosphoproteomic analysis of the mouse brain mu-opioid (MOP) receptor},

author = {Lionel Moulédous and Carine Froment and Odile Burlet-Schiltz and Stefan Schulz and Catherine Mollereau},

doi = {10.1016/j.febslet.2015.07.025},

year  = {2015},

date = {2015-08-01},

journal = {FEBS Letters},

volume = {589},

number = {18},

pages = {2401--2408},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{dupre_multiplex_2015,

title = {Multiplex quantification of protein toxins in human biofluids and food matrices using immunoextraction and high-resolution targeted mass spectrometry},

author = {Mathieu Dupré and Benoit Gilquin and François Fenaille and Cécile Feraudet-Tarisse and Julie Dano and Myriam Ferro and Stéphanie Simon and Christophe Junot and Virginie Brun and François Becher},

doi = {10.1021/acs.analchem.5b01900},

year  = {2015},

date = {2015-08-01},

journal = {Analytical Chemistry},

volume = {87},

number = {16},

pages = {8473--8480},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Lazar2015,

title = {Proteome characterization of melanoma exosomes reveals a specific signature for metastatic cell lines},

author = {Ikrame Lazar and Emily Clement and Manuelle Ducoux-Petit and Laurence Denat and Vanessa Soldan and Stéphanie Dauvillier and Stéphanie Balor and Odile Burlet-Schiltz and Lionel Larue and Catherine Muller and Laurence Nieto},

doi = {10.1111/pcmr.12380},

year  = {2015},

date = {2015-07-01},

journal = {Pigment Cell and Melanoma Research},

volume = {28},

number = {4},

pages = {464--475},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Aubry2015,

title = {Peptides derived from the dependence receptor ALK are proapoptotic for ALK-positive tumors.},

author = {A Aubry and S Galiacy and L Ceccato and C Marchand and C Tricoire and F Lopez and R Bremner and C Racaud-Sultan and B Monsarrat and F Malecaze and M Allouche},

doi = {10.1038/cddis.2015.102},

year  = {2015},

date = {2015-05-01},

journal = {Cell death & disease},

volume = {6},

number = {5},

pages = {e1736},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{champleboux_bromodomains_2015,

title = {Bromodomains shake the hegemony of pan-acetyl antibodies},

author = {Morgane Champleboux and Jérôme Govin},

doi = {10.1002/pmic.201500116},

year  = {2015},

date = {2015-05-01},

journal = {Proteomics},

volume = {15},

number = {9},

pages = {1457-1458},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{pichon_consistency-specificity_2015,

title = {A consistency-specificity trade-off to select source behavior in information fusion},

author = {Frédéric Pichon and Sébastien Destercke and Thomas Burger},

doi = {10.1109/TCYB.2014.2331800},

year  = {2015},

date = {2015-04-01},

journal = {IEEE transactions on cybernetics},

volume = {45},

number = {4},

pages = {598-609},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Bouyssie2015,

title = {mzDB: A File Format Using Multiple Indexing Strategies for the Efficient Analysis of Large LC-MS/MS and SWATH-MS Data Sets},

author = {David Bouyssié and Marc Dubois and Sara Nasso and Anne Gonzalez Peredo and Odile Burlet-Schiltz and Ruedi Aebersold and Bernard Monsarrat},

doi = {10.1074/mcp.O114.039115},

year  = {2015},

date = {2015-03-01},

journal = {Molecular & Cellular Proteomics},

volume = {14},

number = {3},

pages = {771--781},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Zaccaria2015,

title = {Accessing to the minor proteome of red blood cells through the influence of the nanoparticle surface properties on the corona composition.},

author = {Affif Zaccaria and Florence Roux-Dalvai and Ali Bouamrani and Adrien Mombrun and Pascal Mossuz and Bernard Monsarrat and François Berger},

doi = {10.2147/IJN.S70503},

year  = {2015},

date = {2015-03-01},

journal = {International journal of nanomedicine},

volume = {10},

pages = {1869--83},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Boal2015,

title = {TOM1 is a PI5P effector involved in the regulation of endosomal maturation},

author = {Frédéric Boal and Rana Mansour and Marion Gayral and Estelle Saland and Gaëtan Chicanne and Jean-Marie Xuereb and Marlène Marcellin and Odile Burlet-Schiltz and Philippe J. Sansonetti and Bernard Payrastre and Hélène Tronchère},

doi = {10.1242/jcs.166314},

year  = {2015},

date = {2015-02-01},

journal = {Journal of Cell Science},

volume = {128},

number = {4},

pages = {815--827},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{lebert_digestif:_2015,

title = {DIGESTIF: a universal quality standard for the control of bottom-up proteomics experiments},

author = {Dorothée Lebert and Mathilde Louwagie and Sandra Goetze and Guillaume Picard and Reto Ossola and Caroline Duquesne and Konrad Basler and Myriam Ferro and Oliver Rinner and Ruedi Aebersold and Jérôme Garin and Nicolas Mouz and Erich Brunner and Virginie Brun},

doi = {10.1021/pr500834z},

year  = {2015},

date = {2015-02-01},

journal = {Journal of Proteome Research},

volume = {14},

number = {2},

pages = {787--803},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{kessentini_dempstershafer_2015,

title = {A Dempster–Shafer Theory based combination of handwriting recognition systems with multiple rejection strategies},

author = {Yousri Kessentini and Thomas Burger and Thierry Paquet},

url = {http://www.sciencedirect.com/science/article/pii/S0031320314003240},

doi = {10.1016/j.patcog.2014.08.010},

year  = {2015},

date = {2015-02-01},

urldate = {2015-12-18},

journal = {Pattern Recognition},

volume = {48},

number = {2},

pages = {534-544},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN1222,

title = {Structure/Function Analysis of Protein-Protein Interactions Developed by the Yeast Pih1 Platform Protein and Its Partners in Box C/D snoRNP Assembly.},

author = {M Quinternet and B Rothé and M Barbier and C Bobo and JM. Saliou and C Jacquemin and R Back and ME. Chagot and Cianférani S. and P Meyer and C Branlant and B Charpentier and X Manival},

year  = {2015},

date = {2015-01-01},

journal = {J Mol Biol.},

volume = {427},

number = {17},

pages = {2816-2839.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN1250,

title = {Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods.},

author = {C Ramus and A Hovasse and M Marcellin and AM. Hesse and E Mouton-Barbosa and D Bouyssié and S Vaca and C Carapito and K Chaoui and C Bruley and J Garin and S Cianférani and M Ferro and A Van Dorssaeler and O Burlet-Schiltz and C Schaeffer and Y Couté and A Gonzalez Peredo},

year  = {2015},

date = {2015-01-01},

journal = {Data Brief.},

volume = {6},

pages = {286-94.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN1199,

title = {Combining native MS approaches to decipher archaeal box H/ACA ribonucleoprotein particle structure and activity.},

author = {JM. Saliou and X Manival and AS. Tillault and C Atmanene and C Bobo and C Branlant and A Van Dorsselaer and B Charpentier and S Cianférani},

year  = {2015},

date = {2015-01-01},

journal = {Proteomics},

volume = {15},

number = {16},

pages = {2851-2861.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN1191,

title = {Proteomic analysis of three Borrelia burgdorferi sensu lato native species and disseminating clones: Relevance for Lyme vaccine design.},

author = {G Schnell and A Boeuf and B Jaulhac and N Boulanger and E Collin and C Barthel and S De Martino and L Ehret-Sabatier},

year  = {2015},

date = {2015-01-01},

journal = {Proteomics},

volume = {15},

pages = {1280–1290},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN1217,

title = {Discovery and targeted proteomics on cutaneous biopsies infected by borrelia to investigate lyme disease.},

author = {G Schnell and A Boeuf and B Westermann and B Jaulhac and D Lipsker and C Carapito and N Boulanger and L Ehret-Sabatier},

year  = {2015},

date = {2015-01-01},

journal = {Mol Cell Proteomics},

volume = {14},

number = {5},

pages = {1254-64.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN1220,

title = {Semi-synthesis of a HGF/SF kringle one (K1) domain scaffold generates a potent in vivo MET receptor agonist},

author = {C Simonneau and B Leclercq and A Mougel and E Adriaenssens and C Paquet and L Raibaut and N Ollivier and H Drobecq and J Marcoux and S Cianferani and D Tulasne and H Jonge and O Melnyk and J Vicogne},

year  = {2015},

date = {2015-01-01},

journal = {Chem. Sci.},

volume = {6},

pages = {2110-2121},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN1229,

title = {Ion mobility coupled to native mass spectrometry as a relevant tool to investigate extremely small ligand-induced conformational changes},

author = {J Stojko and S Fieulaine and S Petiot-Bécard and A Van Dorsselaer and T Meinnel and C Giglione and S Cianférani},

year  = {2015},

date = {2015-01-01},

journal = {Analyst},

volume = {140},

pages = {7234},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN1213,

title = {Comparative proteomic analysis of the molecular responses of mouse macrophages to titanium dioxide and copper oxide nanoparticles unravels some toxic mechanisms for copper oxide nanoparticles in macrophages.},

author = {S Triboulet and C Aude-Garcia and L Armand and V Collin-Faure and M Chevallet and H Diemer and A Gerdil and F Proamer and JM. Strub and A Habert and N Herlin and A Van Dorsselaer and M Carrière and T Rabilloud},

year  = {2015},

date = {2015-01-01},

journal = {PLoS One},

volume = {10},

number = {4},

pages = {e0124496},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN1225,

title = {N-terminome analysis of the human mitochondrial proteome.},

author = {A -S Vaca Jacome and T Rabilloud and C Schaeffer-Reiss and M Rompais and D Ayoub and L Lane and A Bairoch and A Van Dorsselaer and C Carapito},

year  = {2015},

date = {2015-01-01},

journal = {Proteomics.},

volume = {15},

number = {14},

pages = {2519-2524.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Fabre2015,

title = {Deciphering preferential interactions within supramolecular protein complexes: the proteasome case.},

author = {Bertrand Fabre and Thomas Lambour and Luc Garrigues and François Amalric and Nathalie Vigneron and Thomas Menneteau and Alexandre Stella and Bernard Monsarrat and Benoît Van Eynde and Odile Burlet-Schiltz and Marie-Pierre Bousquet-Dubouch},

doi = {10.15252/msb.20145497},

year  = {2015},

date = {2015-01-01},

journal = {Molecular systems biology},

volume = {11},

number = {1},

pages = {771},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN8b,

title = {A receptor pair with an integrated decoy converts pathogen disabling of transcription factors to immunity},

doi = {10.1016/j.cell.2015.04.025},

issn = {0092-8674 

10974172},

year  = {2015},

date = {2015-01-01},

journal = {Cell},

volume = {161},

number = {5},

pages = {1074--1088},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN83,

title = {Rod-Derived Cone Viability Factor Promotes Cone Survival by Stimulating Aerobic Glycolysis},

author = {N. Ait-Ali and R. Fridlich and G. Millet-Puel and E. Clerin and F. Delalande and C. Jaillard and F. Blond and L. Perrocheau and S. Reichman and L. C. Byrne and A. Olivier-Bandini and J. Bellalou and E. Moyse and F. Bouillaud and X. Nicol and D. Dalkara and A. Dorsselaer and J. A. Sahel and T. Leveillard},

url = {http://www.ncbi.nlm.nih.gov/pubmed/25957687},

doi = {S0092-8674(15)00310-4 [pii] 

10.1016/j.cell.2015.03.023},

issn = {1097-4172 (Electronic) 

0092-8674 (Linking)},

year  = {2015},

date = {2015-01-01},

journal = {Cell},

volume = {161},

number = {4},

pages = {817-832},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN75,

title = {Proteomic tools to decipher microbial community structure and functioning.},

author = {F. Arsène-Ploetze and P. N. Bertin and C. Carapito},

year  = {2015},

date = {2015-01-01},

journal = {Environ Sci Pollut Res Int.},

volume = {22},

number = {18},

pages = {13599-612},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN10b,

title = {Dual Targeting of the Protein Methyltransferase PrmA Contributes to Both Chloroplastic and Mitochondrial Ribosomal Protein L11 Methylation in Arabidopsis},

author = {Meryl Mazzoleni and Sylvie Figuet and Jacqueline Martin-Laffon and Morgane Mininno and Annabelle Gilgen and Mélanie Leroux and Sabine Brugière and Marianne Tardif and Claude Alban and Stéphane Ravanel},

doi = {10.1093/pcp/pcv098},

year  = {2015},

date = {2015-01-01},

journal = {Plant & Cell Physiology},

volume = {56},

pages = {1697-1710},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN1198,

title = {Characterization of the N Terminal Heterogeneities of Monoclonal Antibodies Using In-Gel Charge Derivatization of α-Amines and LC-MS/MS},

author = {D Ayoub and D Bertaccini and H Diemer and E Wagner-Rousset and O Colas and S Cianferani and A Van Dorsselaer and A Beck and C Schaeffer-Reiss},

year  = {2015},

date = {2015-01-01},

journal = {Anal Chem},

volume = {87},

number = {7},

pages = {3784-3790.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN1194,

title = {Cutting-edge mass spectrometry characterization of originator, biosimilar and biobetter antibodies},

author = {A Beck and F Debaene and H Diemer and E Wagner-Rousset and O Colas and A Van Dorsselaer and S Cianférani},

year  = {2015},

date = {2015-01-01},

journal = {Journal of Mass Spectrometry},

volume = {50},

number = {2},

pages = {285–297},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN1231,

title = {Harness the benefits of mass spectrometry for in-depth ADC analytical characterization.},

author = {A Beck and Cianferani S.},

year  = {2015},

date = {2015-01-01},

journal = {LCGC, Advances in Biopharmaceutical Analysis},

volume = {October 2015},

pages = {24-28},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{reichmann_dual_2015,

title = {Dual Activity of Quinolinate Synthase: Triose Phosphate Isomerase and Dehydration Activities Play Together To Form Quinolinate},

author = {Debora Reichmann and Yohann Couté and Sandrine Ollagnier Choudens},

doi = {10.1021/acs.biochem.5b00991},

year  = {2015},

date = {2015-01-01},

journal = {Biochemistry},

volume = {54},

number = {42},

pages = {6443-6446},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{legendre_-depth_2015,

title = {In-depth study of Mollivirus sibericum, a new 30,000-y-old giant virus infecting Acanthamoeba},

author = {Matthieu Legendre and Audrey Lartigue and Lionel Bertaux and Sandra Jeudy and Julia Bartoli and Magali Lescot and Jean-Marie Alempic and Claire Ramus and Christophe Bruley and Karine Labadie and Lyubov Shmakova and Elizaveta Rivkina and Yohann Couté and Chantal Abergel and Jean-Michel Claverie},

doi = {10.1073/pnas.1510795112},

year  = {2015},

date = {2015-01-01},

journal = {Proceedings of the National Academy of Sciences of the United States of America},

volume = {112},

number = {38},

pages = {E5327-5335},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{vilmont_modulatory_2015,

title = {Modulatory role of the anti-apoptotic protein kinase CK2 in the sub-cellular localization of Fas associated death domain protein (FADD)},

author = {Valérie Vilmont and Odile Filhol and Anne-Marie Hesse and Yohann Couté and Christophe Hue and Léa Rémy-Tourneur and Sylvie Mistou and Claude Cochet and Gilles Chiocchia},

doi = {10.1016/j.bbamcr.2015.08.001},

year  = {2015},

date = {2015-01-01},

journal = {Biochimica Et Biophysica Acta},

volume = {1853},

number = {11 Pt A},

pages = {2885-2896},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN1219,

title = {Functional insights from high resolution structures of mouse protein arginine methyltransferase 6.},

author = {L Bonnefond and J Stojko and J Mailliot and N Troffer-Charlier and V Cura and J -M Wurtz and Cianférani S. and J Cavarelli},

year  = {2015},

date = {2015-01-01},

journal = {J Struct Biol.},

volume = {191},

pages = {175–183},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{le_roux_receptor_2015,

title = {A receptor pair with an integrated decoy converts pathogen disabling of transcription factors to immunity},

author = {Clémentine Le Roux and Gaëlle Huet and Alain Jauneau and Laurent Camborde and Dominique Trémousaygue and Alexandra Kraut and Binbin Zhou and Marie Levaillant and Hiroaki Adachi and Hirofumi Yoshioka and Sylvain Raffaele and Richard Berthomé and Yohann Couté and Jane E Parker and Laurent Deslandes},

doi = {10.1016/j.cell.2015.04.025},

year  = {2015},

date = {2015-01-01},

journal = {Cell},

volume = {161},

number = {5},

pages = {1074--1088},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{penzo_human_2015,

title = {Human ribosomes from cells with reduced dyskerin levels are intrinsically altered in translation},

author = {Marianna Penzo and Laura Rocchi and Sabine Brugiere and Domenica Carnicelli and Carmine Onofrillo and Yohann Couté and Maurizio Brigotti and Lorenzo Montanaro},

doi = {10.1096/fj.15-270991},

year  = {2015},

date = {2015-01-01},

journal = {FASEB journal: official publication of the Federation of American Societies for Experimental Biology},

volume = {29},

number = {8},

pages = {3472--3482},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{chassefeyre_regulation_2015,

title = {Regulation of postsynaptic function by the dementia-related ESCRT-III subunit CHMP2B},

author = {Romain Chassefeyre and José Martínez-Hernández and Federica Bertaso and Nathalie Bouquier and Béatrice Blot and Marine Laporte and Sandrine Fraboulet and Yohann Couté and Anny Devoy and Adrian M Isaacs and Karin Pernet-Gallay and Rémy Sadoul and Laurent Fagni and Yves Goldberg},

doi = {10.1523/JNEUROSCI.0586-14.2015},

year  = {2015},

date = {2015-01-01},

journal = {The Journal of Neuroscience: The Official Journal of the Society for Neuroscience},

volume = {35},

number = {7},

pages = {3155-3173},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{couderc_mechanisms_2015,

title = {Mechanisms of local invasion in enteroendocrine tumors: identification of novel candidate cytoskeleton-associated proteins in an experimental mouse model by a proteomic approach and validation in human tumors},

author = {Christophe Couderc and Julien Bollard and Yohann Couté and Patrick Massoma and Gilles Poncet and Florian Lepinasse and Valérie Hervieu and Nicolas Gadot and Jean-Charles Sanchez and Jean-Yves Scoazec and Jean-Jacques Diaz and Colette Roche},

doi = {10.1016/j.mce.2014.09.006},

year  = {2015},

date = {2015-01-01},

journal = {Molecular and Cellular Endocrinology},

volume = {399},

pages = {154--163},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{vanhove_outer_2015,

title = {Outer membrane vesicles are vehicles for the delivery of Vibrio tasmaniensis virulence factors to oyster immune cells},

author = {Audrey Sophie Vanhove and Marylise Duperthuy and Guillaume M Charrière and Frédérique Le Roux and David Goudenège and Benjamin Gourbal and Sylvie Kieffer-Jaquinod and Yohann Couté and Sun Nyunt Wai and Delphine Destoumieux-Garzón},

doi = {10.1111/1462-2920.12535},

issn = {1462-2920},

year  = {2015},

date = {2015-01-01},

journal = {Environmental Microbiology},

volume = {17},

number = {4},

pages = {1152--1165},

abstract = {Vibrio tasmaniensis LGP32, a facultative intracellular pathogen of oyster haemocytes, was shown here to release outer membrane vesicles (OMVs) both in the extracellular milieu and inside haemocytes. Intracellular release of OMVs occurred inside phagosomes of intact haemocytes having phagocytosed few vibrios as well as in damaged haemocytes containing large vacuoles heavily loaded with LGP32. The OMV proteome of LGP32 was shown to be rich in hydrolases (25%) including potential virulence factors such as proteases, lipases, phospholipases, haemolysins and nucleases. One major caseinase/gelatinase named Vsp for vesicular serine protease was found to be specifically secreted through OMVs in which it is enclosed. Vsp was shown to participate in the virulence phenotype of LGP32 in oyster experimental infections. Finally, OMVs were highly protective against antimicrobial peptides, increasing the minimal inhibitory concentration of polymyxin B by 16-fold. Protection was conferred by OMV titration of polymyxin B but did not depend on the activity of Vsp or another OMV-associated protease. Altogether, our results show that OMVs contribute to the pathogenesis of LGP32, being able to deliver virulence factors to host immune cells and conferring protection against antimicrobial peptides.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN1216,

title = {Impact of anatase and rutile titanium dioxide nanoparticles on uptake carriers and efflux pumps in Caco-2 gut epithelial cells.},

author = {M Dorier and E Brun and G Veronesi and F Barreau and K Pernet-Gallay and C Desvergne and T Rabilloud and C Carapito and N Herlin-Boime and M Carrière},

year  = {2015},

date = {2015-01-01},

journal = {Nanoscale},

volume = {7},

number = {16},

pages = {7352-60.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{sage_neutral_2015,

title = {Neutral particle mass spectrometry with nanomechanical systems},

author = {Eric Sage and Ariel Brenac and Thomas Alava and Robert Morel and Cécilia Dupré and Mehmet Selim Hanay and Michael L Roukes and Laurent Duraffourg and Christophe Masselon and Sébastien Hentz},

doi = {10.1038/ncomms7482},

year  = {2015},

date = {2015-01-01},

journal = {Nature Communications},

volume = {6},

pages = {6482},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{court_urine_2015,

title = {Urine sample preparation and fractionation for global proteome profiling by LC-MS},

author = {Magali Court and Jérôme Garin and Christophe D Masselon},

doi = {10.1007/978-1-4939-1872-0_10},

year  = {2015},

date = {2015-01-01},

journal = {Methods in Molecular Biology (Clifton, N.J.)},

volume = {1243},

pages = {175-186},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN1193,

title = {Differentiation between fresh and frozen–thawed sea bass 

(Dicentrarchus labrax) fillets using two-dimensional gel electrophoresis},

author = {P Ethuin and S Marlard and M Delosiere and C Carapito and F Delalande and A Van Dorsselaer and A Dehaut and V Lencel and G Duflos and T Grard},

year  = {2015},

date = {2015-01-01},

journal = {Food Chemistry},

volume = {176},

number = {2015},

pages = {294-301},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{RN1214,

title = {What Glues a Homodimer Together: Systematic Analysis of the Stabilizing Effect of an Aromatic Hot Spot in the Protein-Protein Interface of the tRNA-modifying Enzyme Tgt.},

author = {S Jakobi and PT. Nguyen and F Debaene and S Cianférani and K Reuter and G Klebe},

year  = {2015},

date = {2015-01-01},

journal = {ACS Chem Biol.},

volume = {10},

number = {8},

pages = {1897-1907.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}